Class: Class

URI: owl:Class

Inheritance

• Thing
  • NamedObject
    • Term [ HasSynonyms HasLifeCycle HasProvenance HasMappings HasCategory HasUserInformation HasMinimalMetadata]
      • Class [ ClassExpression]

Slots

Name	Range	Cardinality	Description	Info
never_in_taxon	Class	0..*	None	.
disconnected_from	Class	0..1	None	.
has_rank	Thing	0..1	None	.
disjointWith	string	0..*	None	.
equivalentClass	string	0..*	None	.
intersectionOf	string	0..1	None	.
subClassOf	Class	0..*	None	.
cardinality	string	0..1	None	.
complementOf	string	0..1	None	.
oneOf	ClassExpression	0..1	None	.
unionOf	string	0..1	None	.
has_exact_synonym	label_type	0..*	None	.
has_narrow_synonym	label_type	0..*	None	.
has_broad_synonym	label_type	0..*	None	.
has_related_synonym	label_type	0..*	None	.
alternative_term	string	0..*	None	.
ISA_alternative_term	string	0..*	None	.
IEDB_alternative_term	string	0..*	None	.
editor_preferred_term	string	0..*	None	.
OBO_foundry_unique_label	string	0..*	None	.
deprecated	boolean	0..1	None	.
has_obsolescence_reason	string	0..1	None	.
term_replaced_by	Any	0..1	None	.
consider	Any	0..*	None	.
has_alternative_id	uriorcurie	0..*	None	.
excluded_from_QC_check	Thing	0..1	None	.
excluded_subClassOf	Class	0..*	None	.
excluded_synonym	string	0..*	None	.
should_conform_to	Thing	0..1	None	.
created_by	string	0..1	None	.
creation_date	string	0..*	None	.
contributor	Thing	0..*	None	.
creator	string	0..*	None	.
created	string	0..1	when the term came into being	.
date	string	0..*	when the term was updated	.
isDefinedBy	Ontology	0..1	None	.
editor_note	narrative_text	0..*	None	.
term_editor	string	0..*	None	.
definition_source	string	0..*	None	.
ontology_term_requester	string	0..1	None	.
imported_from	NamedIndividual	0..*	None	.
term_tracker_item	string	0..*	None	.
broadMatch	Class	0..*	None	.
closeMatch	Class	0..*	None	.
exactMatch	Class	0..*	None	.
narrowMatch	Class	0..*	None	.
database_cross_reference	CURIELiteral	0..*	None	.
has_obo_namespace	string	0..*	None	.
category	string	0..1	None	.
in_subset	Subset	0..*	Maps an ontology element to a subset it belongs to	.
conformsTo	Thing	0..*	None	.
comment	string	0..*	None	.
seeAlso	Thing	0..*	None	.
image	Thing	0..1	None	.
example_of_usage	string	0..*	None	.
curator_note	string	0..*	None	.
has_curation_status	string	0..1	None	.
depicted_by	string	0..*	None	.
page	string	0..*	None	.
label	label_type	1..1	None	.
definition	narrative_text	0..* recommended	None	.
id	uriorcurie	1..1	this maps to the URI in RDF	.
type	uriorcurie	0..*	None	.

Usages

used by	used in	type	used
HasLifeCycle	excluded_subClassOf	range	Class
Ontology	has_ontology_root_term	range	Class
Term	excluded_subClassOf	range	Class
Class	never_in_taxon	range	Class
Class	disconnected_from	range	Class
Class	subClassOf	range	Class
Class	excluded_subClassOf	range	Class
Class	broadMatch	range	Class
Class	closeMatch	range	Class
Class	exactMatch	range	Class
Class	narrowMatch	range	Class
Property	excluded_subClassOf	range	Class
AnnotationProperty	excluded_subClassOf	range	Class
ObjectProperty	excluded_subClassOf	range	Class
TransitiveProperty	excluded_subClassOf	range	Class
NamedIndividual	excluded_subClassOf	range	Class
Subset	excluded_subClassOf	range	Class

Identifier and Mapping Information

LinkML Specification

Direct

name: Class
aliases:
- term
- concept
close_mappings:
- skos:Concept
from_schema: http://purl.obolibrary.org/obo/omo/schema
is_a: Term
mixins:
- ClassExpression
slots:
- never_in_taxon
- disconnected_from
- has_rank
slot_usage:
  label:
    name: label
    required: true
  definition:
    name: definition
    recommended: true
  broadMatch:
    name: broadMatch
    range: Class
  exactMatch:
    name: exactMatch
    range: Class
  narrowMatch:
    name: narrowMatch
    range: Class
  closeMatch:
    name: closeMatch
    range: Class
  subClassOf:
    name: subClassOf
    range: Class
class_uri: owl:Class

Induced

name: Class
aliases:
- term
- concept
close_mappings:
- skos:Concept
from_schema: http://purl.obolibrary.org/obo/omo/schema
is_a: Term
mixins:
- ClassExpression
slot_usage:
  label:
    name: label
    required: true
  definition:
    name: definition
    recommended: true
  broadMatch:
    name: broadMatch
    range: Class
  exactMatch:
    name: exactMatch
    range: Class
  narrowMatch:
    name: narrowMatch
    range: Class
  closeMatch:
    name: closeMatch
    range: Class
  subClassOf:
    name: subClassOf
    range: Class
attributes:
  never_in_taxon:
    name: never_in_taxon
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    slot_uri: RO:0002161
    multivalued: true
    alias: never_in_taxon
    owner: Class
    range: Class
  disconnected_from:
    name: disconnected_from
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: shortcut_annotation_property
    alias: disconnected_from
    owner: Class
    range: Class
  has_rank:
    name: has_rank
    exact_mappings:
    - obo:ncbitaxon/subsets/taxslim#has_rank
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    alias: has_rank
    owner: Class
    range: Thing
  disjointWith:
    name: disjointWith
    todos:
    - restrict range
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: logical_predicate
    slot_uri: owl:disjointWith
    multivalued: true
    alias: disjointWith
    owner: Class
    range: string
  equivalentClass:
    name: equivalentClass
    todos:
    - restrict range
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: logical_predicate
    mixins:
    - match_aspect
    slot_uri: owl:equivalentClass
    multivalued: true
    alias: equivalentClass
    owner: Class
    range: string
  intersectionOf:
    name: intersectionOf
    todos:
    - restrict range
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: logical_predicate
    slot_uri: owl:intersectionOf
    alias: intersectionOf
    owner: Class
    range: string
  subClassOf:
    name: subClassOf
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: logical_predicate
    slot_uri: rdfs:subClassOf
    multivalued: true
    alias: subClassOf
    owner: Class
    range: Class
  cardinality:
    name: cardinality
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: logical_predicate
    slot_uri: owl:cardinality
    alias: cardinality
    owner: Class
    range: string
  complementOf:
    name: complementOf
    todos:
    - restrict range
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: logical_predicate
    slot_uri: owl:complementOf
    alias: complementOf
    owner: Class
    range: string
  oneOf:
    name: oneOf
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: logical_predicate
    slot_uri: owl:oneOf
    alias: oneOf
    owner: Class
    range: ClassExpression
  unionOf:
    name: unionOf
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: logical_predicate
    slot_uri: owl:unionOf
    alias: unionOf
    owner: Class
    range: string
  has_exact_synonym:
    name: has_exact_synonym
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: synonym
    slot_uri: oio:hasExactSynonym
    multivalued: true
    alias: has_exact_synonym
    owner: Class
    disjoint_with:
    - label
    range: label type
  has_narrow_synonym:
    name: has_narrow_synonym
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: synonym
    slot_uri: oio:hasNarrowSynonym
    multivalued: true
    alias: has_narrow_synonym
    owner: Class
    range: label type
  has_broad_synonym:
    name: has_broad_synonym
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: synonym
    slot_uri: oio:hasBroadSynonym
    multivalued: true
    alias: has_broad_synonym
    owner: Class
    range: label type
  has_related_synonym:
    name: has_related_synonym
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    slot_uri: oio:hasRelatedSynonym
    multivalued: true
    alias: has_related_synonym
    owner: Class
    range: label type
  alternative_term:
    name: alternative_term
    exact_mappings:
    - skos:altLabel
    in_subset:
    - allotrope permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    slot_uri: IAO:0000118
    multivalued: true
    alias: alternative_term
    owner: Class
    range: string
  ISA_alternative_term:
    name: ISA_alternative_term
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: alternative_term
    slot_uri: OBI:0001847
    multivalued: true
    alias: ISA_alternative_term
    owner: Class
    range: string
  IEDB_alternative_term:
    name: IEDB_alternative_term
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: alternative_term
    slot_uri: OBI:9991118
    multivalued: true
    alias: IEDB_alternative_term
    owner: Class
    range: string
  editor_preferred_term:
    name: editor_preferred_term
    in_subset:
    - obi permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: alternative_term
    slot_uri: IAO:0000111
    multivalued: true
    alias: editor_preferred_term
    owner: Class
    range: string
  OBO_foundry_unique_label:
    name: OBO_foundry_unique_label
    todos:
    - add uniquekey
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: alternative_term
    slot_uri: IAO:0000589
    multivalued: true
    alias: OBO_foundry_unique_label
    owner: Class
    range: string
  deprecated:
    name: deprecated
    aliases:
    - is obsolete
    in_subset:
    - allotrope permitted profile
    - go permitted profile
    - obi permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: owl:deprecated
    alias: deprecated
    owner: Class
    range: boolean
  has_obsolescence_reason:
    name: has_obsolescence_reason
    todos:
    - restrict range
    comments:
    - '{''RULE'': ''subject must be deprecated''}'
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: IAO:0000231
    alias: has_obsolescence_reason
    owner: Class
    range: string
  term_replaced_by:
    name: term_replaced_by
    exact_mappings:
    - dcterms:isReplacedBy
    comments:
    - '{''RULE'': ''subject must be deprecated''}'
    in_subset:
    - go permitted profile
    - obi permitted profile
    - allotrope permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: IAO:0100001
    alias: term_replaced_by
    owner: Class
    range: Any
  consider:
    name: consider
    comments:
    - '{''RULE'': ''subject must be deprecated''}'
    in_subset:
    - go permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: oio:consider
    multivalued: true
    alias: consider
    owner: Class
    range: Any
  has_alternative_id:
    name: has_alternative_id
    comments:
    - '{''RULE'': ''object must be deprecated''}'
    in_subset:
    - go permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: oio:hasAlternativeId
    multivalued: true
    alias: has_alternative_id
    owner: Class
    range: uriorcurie
  excluded_from_QC_check:
    name: excluded_from_QC_check
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: excluded_axiom
    alias: excluded_from_QC_check
    owner: Class
    range: Thing
  excluded_subClassOf:
    name: excluded_subClassOf
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: excluded_axiom
    multivalued: true
    alias: excluded_subClassOf
    owner: Class
    range: Class
  excluded_synonym:
    name: excluded_synonym
    exact_mappings:
    - skos:hiddenSynonym
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: excluded_axiom
    multivalued: true
    alias: excluded_synonym
    owner: Class
    range: string
  should_conform_to:
    name: should_conform_to
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: excluded_axiom
    alias: should_conform_to
    owner: Class
    range: Thing
  created_by:
    name: created_by
    deprecated: proposed obsoleted by OMO group 2022-04-12
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    deprecated_element_has_exact_replacement: creator
    is_a: provenance_property
    slot_uri: oio:created_by
    alias: created_by
    owner: Class
    range: string
  creation_date:
    name: creation_date
    deprecated: proposed obsoleted by OMO group 2022-04-12
    todos:
    - restrict range
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    deprecated_element_has_exact_replacement: created
    is_a: provenance_property
    slot_uri: oio:creation_date
    multivalued: true
    alias: creation_date
    owner: Class
    range: string
  contributor:
    name: contributor
    close_mappings:
    - prov:wasAttributedTo
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: dcterms:contributor
    multivalued: true
    alias: contributor
    owner: Class
    range: Thing
  creator:
    name: creator
    close_mappings:
    - prov:wasAttributedTo
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: dcterms:creator
    multivalued: true
    alias: creator
    owner: Class
    range: string
  created:
    name: created
    close_mappings:
    - pav:createdOn
    description: when the term came into being
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: dcterms:created
    multivalued: false
    alias: created
    owner: Class
    range: string
  date:
    name: date
    close_mappings:
    - pav:authoredOn
    description: when the term was updated
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: dcterms:date
    multivalued: true
    alias: date
    owner: Class
    range: string
  isDefinedBy:
    name: isDefinedBy
    close_mappings:
    - pav:importedFrom
    - dcterms:publisher
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    slot_uri: rdfs:isDefinedBy
    alias: isDefinedBy
    owner: Class
    range: Ontology
  editor_note:
    name: editor_note
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: IAO:0000116
    multivalued: true
    alias: editor_note
    owner: Class
    range: narrative text
  term_editor:
    name: term_editor
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: IAO:0000117
    multivalued: true
    alias: term_editor
    owner: Class
    range: string
  definition_source:
    name: definition_source
    todos:
    - restrict range
    in_subset:
    - obi permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: IAO:0000119
    multivalued: true
    alias: definition_source
    owner: Class
    range: string
  ontology_term_requester:
    name: ontology_term_requester
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: IAO:0000234
    alias: ontology_term_requester
    owner: Class
    range: string
  imported_from:
    name: imported_from
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: IAO:0000412
    multivalued: true
    alias: imported_from
    owner: Class
    range: NamedIndividual
  term_tracker_item:
    name: term_tracker_item
    todos:
    - restrict range
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: IAO:0000233
    multivalued: true
    alias: term_tracker_item
    owner: Class
    range: string
  broadMatch:
    name: broadMatch
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: match
    slot_uri: skos:broadMatch
    multivalued: true
    alias: broadMatch
    owner: Class
    range: Class
  closeMatch:
    name: closeMatch
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: match
    slot_uri: skos:closeMatch
    multivalued: true
    alias: closeMatch
    owner: Class
    range: Class
  exactMatch:
    name: exactMatch
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: match
    slot_uri: skos:exactMatch
    multivalued: true
    alias: exactMatch
    owner: Class
    range: Class
  narrowMatch:
    name: narrowMatch
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: match
    slot_uri: skos:narrowMatch
    multivalued: true
    alias: narrowMatch
    owner: Class
    range: Class
  database_cross_reference:
    name: database_cross_reference
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: match
    slot_uri: oio:hasDbXref
    multivalued: true
    alias: database_cross_reference
    owner: Class
    range: CURIELiteral
  has_obo_namespace:
    name: has_obo_namespace
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    slot_uri: oio:hasOBONamespace
    multivalued: true
    alias: has_obo_namespace
    owner: Class
    range: string
  category:
    name: category
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: informative_property
    slot_uri: biolink:category
    alias: category
    owner: Class
    range: string
  in_subset:
    name: in_subset
    description: Maps an ontology element to a subset it belongs to
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    slot_uri: oio:inSubset
    multivalued: true
    alias: in_subset
    owner: Class
    range: Subset
  conformsTo:
    name: conformsTo
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: informative_property
    slot_uri: dcterms:conformsTo
    multivalued: true
    alias: conformsTo
    owner: Class
    range: Thing
  comment:
    name: comment
    comments:
    - in obo format, a term cannot have more than one comment
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: informative_property
    slot_uri: rdfs:comment
    multivalued: true
    alias: comment
    owner: Class
    range: string
  seeAlso:
    name: seeAlso
    todos:
    - restrict range
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    slot_uri: rdfs:seeAlso
    multivalued: true
    alias: seeAlso
    owner: Class
    range: Thing
  image:
    name: image
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: informative_property
    slot_uri: sdo:image
    alias: image
    owner: Class
    range: Thing
  example_of_usage:
    name: example_of_usage
    exact_mappings:
    - skos:example
    in_subset:
    - allotrope permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: informative_property
    slot_uri: IAO:0000112
    multivalued: true
    alias: example_of_usage
    owner: Class
    range: string
  curator_note:
    name: curator_note
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: provenance_property
    slot_uri: IAO:0000232
    multivalued: true
    alias: curator_note
    owner: Class
    range: string
  has_curation_status:
    name: has_curation_status
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: informative_property
    slot_uri: IAO:0000114
    alias: has_curation_status
    owner: Class
    range: string
  depicted_by:
    name: depicted_by
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: informative_property
    slot_uri: foaf:depicted_by
    multivalued: true
    alias: depicted_by
    owner: Class
    range: string
  page:
    name: page
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: informative_property
    slot_uri: foaf:page
    multivalued: true
    alias: page
    owner: Class
    range: string
  label:
    name: label
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: core_property
    slot_uri: rdfs:label
    multivalued: false
    alias: label
    owner: Class
    range: label type
    required: true
  definition:
    name: definition
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: core_property
    slot_uri: IAO:0000115
    multivalued: true
    alias: definition
    owner: Class
    range: narrative text
    recommended: true
  id:
    name: id
    description: this maps to the URI in RDF
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: core_property
    identifier: true
    alias: id
    owner: Class
    range: uriorcurie
    required: true
  type:
    name: type
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: logical_predicate
    slot_uri: rdf:type
    multivalued: true
    designates_type: true
    alias: type
    owner: Class
    range: uriorcurie
class_uri: owl:Class