Class: HasLifeCycle

• NOTE: this is a mixin class intended to be used in combination with other classes, and not used directly

URI: omoschema:HasLifeCycle

Inheritance

• AnnotationPropertyMixin
  • HasLifeCycle

Slots

Name	Range	Cardinality	Description	Info
deprecated	boolean	0..1	None	.
has_obsolescence_reason	string	0..1	None	.
term_replaced_by	Any	0..1	None	.
consider	Any	0..*	None	.
has_alternative_id	uriorcurie	0..*	None	.
excluded_from_QC_check	Thing	0..1	None	.
excluded_subClassOf	Class	0..*	None	.
excluded_synonym	string	0..*	None	.
should_conform_to	Thing	0..1	None	.

Usages

Identifier and Mapping Information

Rules

LinkML Specification

Direct

name: HasLifeCycle
from_schema: http://purl.obolibrary.org/obo/omo/schema
is_a: AnnotationPropertyMixin
mixin: true
slots:
- deprecated
- has_obsolescence_reason
- term_replaced_by
- consider
- has_alternative_id
- excluded_from_QC_check
- excluded_subClassOf
- excluded_synonym
- should_conform_to
rules:
- preconditions:
    slot_conditions:
      deprecated:
        name: deprecated
        equals_expression: 'true'
  postconditions:
    any_of:
    - slot_conditions:
        term_replaced_by:
          name: term_replaced_by
          required: true
    - slot_conditions:
        consider:
          name: consider
          required: true
  description: if a term is deprecated it should have either consider or replaced
    by
- preconditions:
    none_of:
    - slot_conditions:
        deprecated:
          name: deprecated
          equals_expression: 'true'
  postconditions:
    none_of:
    - slot_conditions:
        term_replaced_by:
          name: term_replaced_by
          required: true
    - slot_conditions:
        consider:
          name: consider
          required: true
  description: if a term is not deprecated it should have neither consider nor replaced
    by
- preconditions:
    slot_conditions:
      deprecated:
        name: deprecated
        equals_expression: 'true'
  postconditions:
    slot_conditions:
      label:
        name: label
        pattern: '^obsolete '
  description: if a term is deprecated its label should start with the string obsolete

Induced

name: HasLifeCycle
from_schema: http://purl.obolibrary.org/obo/omo/schema
is_a: AnnotationPropertyMixin
mixin: true
attributes:
  deprecated:
    name: deprecated
    aliases:
    - is obsolete
    in_subset:
    - allotrope permitted profile
    - go permitted profile
    - obi permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: owl:deprecated
    alias: deprecated
    owner: HasLifeCycle
    range: boolean
  has_obsolescence_reason:
    name: has_obsolescence_reason
    todos:
    - restrict range
    comments:
    - '{''RULE'': ''subject must be deprecated''}'
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: IAO:0000231
    alias: has_obsolescence_reason
    owner: HasLifeCycle
    range: string
  term_replaced_by:
    name: term_replaced_by
    exact_mappings:
    - dcterms:isReplacedBy
    comments:
    - '{''RULE'': ''subject must be deprecated''}'
    in_subset:
    - go permitted profile
    - obi permitted profile
    - allotrope permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: IAO:0100001
    alias: term_replaced_by
    owner: HasLifeCycle
    range: Any
  consider:
    name: consider
    comments:
    - '{''RULE'': ''subject must be deprecated''}'
    in_subset:
    - go permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: oio:consider
    multivalued: true
    alias: consider
    owner: HasLifeCycle
    range: Any
  has_alternative_id:
    name: has_alternative_id
    comments:
    - '{''RULE'': ''object must be deprecated''}'
    in_subset:
    - go permitted profile
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: obsoletion_related_property
    slot_uri: oio:hasAlternativeId
    multivalued: true
    alias: has_alternative_id
    owner: HasLifeCycle
    range: uriorcurie
  excluded_from_QC_check:
    name: excluded_from_QC_check
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: excluded_axiom
    alias: excluded_from_QC_check
    owner: HasLifeCycle
    range: Thing
  excluded_subClassOf:
    name: excluded_subClassOf
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: excluded_axiom
    multivalued: true
    alias: excluded_subClassOf
    owner: HasLifeCycle
    range: Class
  excluded_synonym:
    name: excluded_synonym
    exact_mappings:
    - skos:hiddenSynonym
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: excluded_axiom
    multivalued: true
    alias: excluded_synonym
    owner: HasLifeCycle
    range: string
  should_conform_to:
    name: should_conform_to
    from_schema: http://purl.obolibrary.org/obo/omo/schema
    is_a: excluded_axiom
    alias: should_conform_to
    owner: HasLifeCycle
    range: Thing
rules:
- preconditions:
    slot_conditions:
      deprecated:
        name: deprecated
        equals_expression: 'true'
  postconditions:
    any_of:
    - slot_conditions:
        term_replaced_by:
          name: term_replaced_by
          required: true
    - slot_conditions:
        consider:
          name: consider
          required: true
  description: if a term is deprecated it should have either consider or replaced
    by
- preconditions:
    none_of:
    - slot_conditions:
        deprecated:
          name: deprecated
          equals_expression: 'true'
  postconditions:
    none_of:
    - slot_conditions:
        term_replaced_by:
          name: term_replaced_by
          required: true
    - slot_conditions:
        consider:
          name: consider
          required: true
  description: if a term is not deprecated it should have neither consider nor replaced
    by
- preconditions:
    slot_conditions:
      deprecated:
        name: deprecated
        equals_expression: 'true'
  postconditions:
    slot_conditions:
      label:
        name: label
        pattern: '^obsolete '
  description: if a term is deprecated its label should start with the string obsolete