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semantic-llama

None

URI: http://w3id.org/linkml/ai/templates/semantic-llama Name: semantic-llama

Classes

Class Description
Action
AnnotatorResult
Any
BiologicalProcess
CausalRelationship
CellularComponent
CellularProcess
ChemicalEntity
CompoundExpression
Disease
DiseaseTreatmentSummary
Drug
Environment
EnvironmentalMaterial
ExtractionResult A result of extracting knowledge on text
FoodItem
Gene
GeneGeneInteraction
GeneMolecularActivityRelationship
GeneMolecularActivityRelationship2
GeneOrganismRelationship
GeneReactionPairing
GeneSubcellularLocalizationRelationship
GeneToReaction
GoCamAnnotations
Ingredient
Inheritance
Location
Measurement
Mechanism
MendelianDisease
MolecularActivity
Molecule
MultiGeneToReaction
NamedEntity
Organism
Pathway
Publication
Reaction
ReactionGrouping
Recipe
RecipeCategory
Relationship
SequencingTechnology
Step
Study
Symptom
Treatment
TreatmentEfficacy
TreatmentMechanism
Unit
Variable

Slots

Slot Description
abstract The abstract of the publication
action the action taken in this step (e
activities semicolon-separated list of molecular activities
affects
category a semicolon separated list of the categories to which this recipe belongs
causal_relationships
cause the variable that is the cause of the effect
cellular_processes semicolon-separated list of cellular processes
characteristic
description a brief textual description of the recipe
disease the name of the disease that is treated
drugs semicolon-separated list of named small molecule drugs
effect the things that is affected
efficacy
environmental_material the environmental material that was sampled
environments
food_item the food item
full_text The full text of the publication
gene name of the gene that catalyzes the reaction
gene1
gene2
gene_activities semicolon-separated list of gene to molecular activity relationships
gene_functions semicolon-separated list of gene to molecular activity relationships
gene_gene_interactions semicolon-separated list of gene to gene interactions
gene_localizations semicolon-separated list of gene to subcellular localization relationships
gene_organisms
gene_reaction_pairings semicolon separated list of gene to reaction pairings
genes semicolon separated list of genes that catalyzes the mentioned reactions
id
ingredients a semicolon separated list of the ingredients plus quantities of the recipe
inheritance
input_id
input_text
input_title
inputs a semicolon separated list of the inputs of this step
label The label of the named thing
left_side semicolon separated list of chemical entities on the left side
location the sites at which the study was conducted
measurements
mechanism
molecular_activity
name the name of the disease
named_entities
object_id
object_text
organism
organisms semicolon-separated list of organism taxons
outputs a semicolon separated list of the outputs of this step
pathways semicolon-separated list of pathways
prompt
quantity the quantity of the ingredient
raw_completion_output
reaction equation describing the reaction (e
reactions semicolon separated list of reaction equations (e
results
right_side semicolon separated list of chemical entities on the right side
severity
steps a semicolon separated list of the individual steps involved in this recipe
subclass_of the category to which this biological process belongs
subject_text
symptoms
synonyms alternative names of the reaction
target
title The title of the publication
treatment
treatment_efficacies semicolon-separated list of treatment to efficacy associations, e
treatment_mechanisms semicolon-separated list of treatment to asterisk-separated mechanism associa...
treatments semicolon-separated list of therapies and treatments
unit the unit of the measurement
value the value of the measurement
variables

Enumerations

Enumeration Description

Types

Type Description
xsd:boolean A binary (true or false) value
xsd:date a date (year, month and day) in an idealized calendar
linkml:DateOrDatetime Either a date or a datetime
xsd:dateTime The combination of a date and time
xsd:decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
xsd:double A real number that conforms to the xsd:double specification
xsd:float A real number that conforms to the xsd:float specification
xsd:integer An integer
xsd:string Prefix part of CURIE
shex:nonLiteral A URI, CURIE or BNODE that represents a node in a model
shex:iri A URI or CURIE that represents an object in the model
xsd:string A character string
xsd:dateTime A time object represents a (local) time of day, independent of any particular...
xsd:anyURI a complete URI
xsd:anyURI a URI or a CURIE

Subsets

Subset Description