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Class: Gene

URI: bp:Gene

classDiagram class Gene NamedEntity <|-- Gene Gene : id Gene : label

Inheritance

Slots

Name Cardinality and Range Description Inheritance
label 0..1
NONE		 NamedEntity
id 0..1
NONE		 NamedEntity

Usages

used by used in type used
GeneToReaction gene range Gene
MultiGeneToReaction genes range Gene
GeneReactionPairing gene range Gene
MendelianDisease genes range Gene
GoCamAnnotations genes range Gene
GeneOrganismRelationship gene range Gene
GeneMolecularActivityRelationship gene range Gene
GeneMolecularActivityRelationship2 gene range Gene
GeneSubcellularLocalizationRelationship gene range Gene
GeneGeneInteraction gene1 range Gene
GeneGeneInteraction gene2 range Gene
BiologicalProcess genes range Gene

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • HGNC

Annotations

property value
annotators sqlite:obo:hgnc

Schema Source

  • from schema: https://w3id.org/linkml/ai/templates/biological_process

Mappings

Mapping Type Mapped Value
self bp:Gene
native bp:Gene

LinkML Source

Direct

name: Gene
id_prefixes:
- HGNC
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hgnc
from_schema: https://w3id.org/linkml/ai/templates/biological_process
rank: 1000
is_a: NamedEntity

Induced

name: Gene
id_prefixes:
- HGNC
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hgnc
from_schema: https://w3id.org/linkml/ai/templates/biological_process
rank: 1000
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    from_schema: http://w3id.org/linkml/ai/templates/core
    rank: 1000
    identifier: true
    alias: id
    owner: Gene
    domain_of:
    - NamedEntity
    - Publication
    range: string
  label:
    name: label
    description: The label of the named thing
    from_schema: http://w3id.org/linkml/ai/templates/core
    rank: 1000
    alias: label
    owner: Gene
    domain_of:
    - NamedEntity
    - Recipe
    - Reaction
    - BiologicalProcess
    range: string