Class: GoCamAnnotations

URI: gocam:GoCamAnnotations

classDiagram class GoCamAnnotations GoCamAnnotations : activities GoCamAnnotations : cellular_processes GoCamAnnotations : gene_functions GoCamAnnotations : gene_gene_interactions GoCamAnnotations : gene_localizations GoCamAnnotations : gene_organisms GoCamAnnotations : genes GoCamAnnotations : organisms GoCamAnnotations : pathways

Slots

Name	Cardinality and Range	Description	Inheritance
genes	0..1 NONE		direct
organisms	0..* Organism	semicolon-separated list of organism taxons	direct
gene_organisms	0..* GeneOrganismRelationship		direct
activities	0..* MolecularActivity	semicolon-separated list of molecular activities	direct
gene_functions	0..* GeneMolecularActivityRelationship	semicolon-separated list of gene to molecular activity relationships	direct
cellular_processes	0..* CellularProcess	semicolon-separated list of cellular processes	direct
pathways	0..* Pathway	semicolon-separated list of pathways	direct
gene_gene_interactions	0..* GeneGeneInteraction	semicolon-separated list of gene to gene interactions	direct
gene_localizations	0..* GeneSubcellularLocalizationRelationship	semicolon-separated list of gene to subcellular localization relationships	direct

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/linkml/ai/templates/gocam

Mappings

Mapping Type	Mapped Value
self	gocam:GoCamAnnotations
native	gocam:GoCamAnnotations

LinkML Source

Direct

name: GoCamAnnotations
from_schema: http://w3id.org/linkml/ai/templates/gocam
rank: 1000
attributes:
  genes:
    name: genes
    description: semicolon-separated list of genes
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    multivalued: true
    range: Gene
  organisms:
    name: organisms
    description: semicolon-separated list of organism taxons
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    range: Organism
  gene_organisms:
    name: gene_organisms
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of asterisk separated gene to organism relationships
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    range: GeneOrganismRelationship
  activities:
    name: activities
    description: semicolon-separated list of molecular activities
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    range: MolecularActivity
  gene_functions:
    name: gene_functions
    description: semicolon-separated list of gene to molecular activity relationships
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    range: GeneMolecularActivityRelationship
  cellular_processes:
    name: cellular_processes
    description: semicolon-separated list of cellular processes
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    range: CellularProcess
  pathways:
    name: pathways
    description: semicolon-separated list of pathways
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    range: Pathway
  gene_gene_interactions:
    name: gene_gene_interactions
    description: semicolon-separated list of gene to gene interactions
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    range: GeneGeneInteraction
  gene_localizations:
    name: gene_localizations
    description: semicolon-separated list of gene to subcellular localization relationships
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    range: GeneSubcellularLocalizationRelationship

Induced

name: GoCamAnnotations
from_schema: http://w3id.org/linkml/ai/templates/gocam
rank: 1000
attributes:
  genes:
    name: genes
    description: semicolon-separated list of genes
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    multivalued: true
    alias: genes
    owner: GoCamAnnotations
    domain_of:
    - MultiGeneToReaction
    - MendelianDisease
    - GoCamAnnotations
    - BiologicalProcess
    range: Gene
  organisms:
    name: organisms
    description: semicolon-separated list of organism taxons
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    alias: organisms
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: Organism
  gene_organisms:
    name: gene_organisms
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of asterisk separated gene to organism relationships
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    alias: gene_organisms
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: GeneOrganismRelationship
  activities:
    name: activities
    description: semicolon-separated list of molecular activities
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    alias: activities
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: MolecularActivity
  gene_functions:
    name: gene_functions
    description: semicolon-separated list of gene to molecular activity relationships
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    alias: gene_functions
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: GeneMolecularActivityRelationship
  cellular_processes:
    name: cellular_processes
    description: semicolon-separated list of cellular processes
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    alias: cellular_processes
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: CellularProcess
  pathways:
    name: pathways
    description: semicolon-separated list of pathways
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    alias: pathways
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: Pathway
  gene_gene_interactions:
    name: gene_gene_interactions
    description: semicolon-separated list of gene to gene interactions
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    alias: gene_gene_interactions
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: GeneGeneInteraction
  gene_localizations:
    name: gene_localizations
    description: semicolon-separated list of gene to subcellular localization relationships
    from_schema: http://w3id.org/linkml/ai/templates/gocam
    rank: 1000
    multivalued: true
    alias: gene_localizations
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: GeneSubcellularLocalizationRelationship