MIxS schema

Minimal Information about any Sequence Standard

Packages

  • Air - air
    • AirME - Combinatorial checklist Metagenome or Environmental with environmental package air
    • AirMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package air
    • AirMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package air
    • AirMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package air
    • AirMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package air
    • AirMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package air
    • AirMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package air
    • AirMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package air
    • AirMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package air
    • AirMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package air
    • AirMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package air
  • BuiltEnvironment - built environment
    • BuiltEnvironmentME - Combinatorial checklist Metagenome or Environmental with environmental package built environment
    • BuiltEnvironmentMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package built environment
    • BuiltEnvironmentMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package built environment
    • BuiltEnvironmentMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package built environment
    • BuiltEnvironmentMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package built environment
    • BuiltEnvironmentMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package built environment
    • BuiltEnvironmentMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package built environment
    • BuiltEnvironmentMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package built environment
    • BuiltEnvironmentMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package built environment
    • BuiltEnvironmentMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package built environment
    • BuiltEnvironmentMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package built environment
  • Core - Core package. Do not use this directly, this is used to build other packages
  • Host-associated - host-associated
    • Host-associatedME - Combinatorial checklist Metagenome or Environmental with environmental package host-associated
    • Host-associatedMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package host-associated
    • Host-associatedMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package host-associated
    • Host-associatedMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package host-associated
    • Host-associatedMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package host-associated
    • Host-associatedMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package host-associated
    • Host-associatedMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package host-associated
    • Host-associatedMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package host-associated
    • Host-associatedMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package host-associated
    • Host-associatedMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package host-associated
    • Host-associatedMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package host-associated
  • Human-associated - human-associated
    • Human-associatedME - Combinatorial checklist Metagenome or Environmental with environmental package human-associated
    • Human-associatedMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-associated
    • Human-associatedMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-associated
    • Human-associatedMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-associated
    • Human-associatedMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-associated
    • Human-associatedMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-associated
    • Human-associatedMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-associated
    • Human-associatedMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-associated
    • Human-associatedMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-associated
    • Human-associatedMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-associated
    • Human-associatedMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-associated
  • Human-gut - human-gut
    • Human-gutME - Combinatorial checklist Metagenome or Environmental with environmental package human-gut
    • Human-gutMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-gut
    • Human-gutMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-gut
    • Human-gutMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-gut
    • Human-gutMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-gut
    • Human-gutMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-gut
    • Human-gutMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-gut
    • Human-gutMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-gut
    • Human-gutMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-gut
    • Human-gutMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-gut
    • Human-gutMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-gut
  • Human-oral - human-oral
    • Human-oralME - Combinatorial checklist Metagenome or Environmental with environmental package human-oral
    • Human-oralMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-oral
    • Human-oralMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-oral
    • Human-oralMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-oral
    • Human-oralMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-oral
    • Human-oralMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-oral
    • Human-oralMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-oral
    • Human-oralMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-oral
    • Human-oralMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-oral
    • Human-oralMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-oral
    • Human-oralMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-oral
  • Human-skin - human-skin
    • Human-skinME - Combinatorial checklist Metagenome or Environmental with environmental package human-skin
    • Human-skinMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-skin
    • Human-skinMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-skin
    • Human-skinMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-skin
    • Human-skinMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-skin
    • Human-skinMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-skin
    • Human-skinMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-skin
    • Human-skinMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-skin
    • Human-skinMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-skin
    • Human-skinMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-skin
    • Human-skinMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-skin
  • Human-vaginal - human-vaginal
    • Human-vaginalME - Combinatorial checklist Metagenome or Environmental with environmental package human-vaginal
    • Human-vaginalMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-vaginal
    • Human-vaginalMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-vaginal
    • Human-vaginalMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-vaginal
    • Human-vaginalMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-vaginal
    • Human-vaginalMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-vaginal
    • Human-vaginalMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-vaginal
    • Human-vaginalMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-vaginal
    • Human-vaginalMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-vaginal
    • Human-vaginalMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-vaginal
    • Human-vaginalMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-vaginal
  • HydrocarbonResources-cores - hydrocarbon resources-cores
  • HydrocarbonResources-fluidsSwabs - hydrocarbon resources-fluids/swabs
  • MicrobialMatBiofilm - microbial mat/biofilm
    • MicrobialMatBiofilmME - Combinatorial checklist Metagenome or Environmental with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package microbial mat_biofilm
    • MicrobialMatBiofilmMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package microbial mat_biofilm
  • MiscellaneousNaturalOrArtificialEnvironment - miscellaneous natural or artificial environment
  • Plant-associated - plant-associated
    • Plant-associatedME - Combinatorial checklist Metagenome or Environmental with environmental package plant-associated
    • Plant-associatedMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package plant-associated
    • Plant-associatedMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package plant-associated
    • Plant-associatedMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package plant-associated
    • Plant-associatedMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package plant-associated
    • Plant-associatedMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package plant-associated
    • Plant-associatedMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package plant-associated
    • Plant-associatedMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package plant-associated
    • Plant-associatedMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package plant-associated
    • Plant-associatedMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package plant-associated
    • Plant-associatedMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package plant-associated
  • QuantityValue - used to record a measurement
  • Sediment - sediment
    • SedimentME - Combinatorial checklist Metagenome or Environmental with environmental package sediment
    • SedimentMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package sediment
    • SedimentMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package sediment
    • SedimentMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package sediment
    • SedimentMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package sediment
    • SedimentMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package sediment
    • SedimentMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package sediment
    • SedimentMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package sediment
    • SedimentMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package sediment
    • SedimentMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package sediment
    • SedimentMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package sediment
  • Soil - soil
    • SoilME - Combinatorial checklist Metagenome or Environmental with environmental package soil
    • SoilMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package soil
    • SoilMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package soil
    • SoilMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package soil
    • SoilMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package soil
    • SoilMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package soil
    • SoilMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package soil
    • SoilMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package soil
    • SoilMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package soil
    • SoilMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package soil
    • SoilMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package soil
  • WastewaterSludge - wastewater/sludge
    • WastewaterSludgeME - Combinatorial checklist Metagenome or Environmental with environmental package wastewater_sludge
    • WastewaterSludgeMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package wastewater_sludge
    • WastewaterSludgeMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package wastewater_sludge
    • WastewaterSludgeMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package wastewater_sludge
    • WastewaterSludgeMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package wastewater_sludge
    • WastewaterSludgeMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package wastewater_sludge
    • WastewaterSludgeMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package wastewater_sludge
    • WastewaterSludgeMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package wastewater_sludge
    • WastewaterSludgeMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package wastewater_sludge
    • WastewaterSludgeMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package wastewater_sludge
    • WastewaterSludgeMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package wastewater_sludge
  • Water - water
    • WaterME - Combinatorial checklist Metagenome or Environmental with environmental package water
    • WaterMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package water
    • WaterMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package water
    • WaterMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package water
    • WaterMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package water
    • WaterMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package water
    • WaterMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package water
    • WaterMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package water
    • WaterMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package water
    • WaterMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package water
    • WaterMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package water

Checklists

  • ME - Metagenome or Environmental
  • MIGSBacteria - Minimal Information about a Genome Sequence: cultured bacteria/archaea
  • MIGSEukaryote - Minimal Information about a Genome Sequence: eukaryote
  • MIGSOrg - Minimal Information about a Genome Sequence: org
  • MIGSPlant - Minimal Information about a Genome Sequence: plant
  • MIGSVirus - Minimal Information about a Genome Sequence: cultured bacteria/archaea
  • MIMAG - Minimum Information About a Metagenome-Assembled Genome
  • MIMARKSSpecimen - Minimal Information about a Marker Specimen: specimen
  • MIMARKSSurvey - Minimal Information about a Marker Specimen: survey
  • MISAG - Minimum Information About a Single Amplified Genome
  • MIUVIG - Minimum Information About an Uncultivated Virus Genome

Slots

Subsets

Types

Built in

  • Bool
  • Decimal
  • ElementIdentifier
  • NCName
  • NodeIdentifier
  • URI
  • URIorCURIE
  • XSDDate
  • XSDDateTime
  • XSDTime
  • float
  • int
  • str

Defined

  • Boolean (Bool) - A binary (true or false) value
  • Date (XSDDate) - a date (year, month and day) in an idealized calendar
  • Datetime (XSDDateTime) - The combination of a date and time
  • Decimal (Decimal) - A real number with arbitrary precision that conforms to the xsd:decimal specification
  • Double (float) - A real number that conforms to the xsd:double specification
  • Float (float) - A real number that conforms to the xsd:float specification
  • Integer (int) - An integer
  • Ncname (NCName) - Prefix part of CURIE
  • Nodeidentifier (NodeIdentifier) - A URI, CURIE or BNODE that represents a node in a model.
  • Objectidentifier (ElementIdentifier) - A URI or CURIE that represents an object in the model.
  • String (str) - A character string
  • Time (XSDTime) - A time object represents a (local) time of day, independent of any particular day
  • Uri (URI) - a complete URI
  • Uriorcurie (URIorCURIE) - a URI or a CURIE